Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
total RNA-seq
674
ChIP-seq
177
DNase-seq
64
ATAC-seq
17
WGBS
16
small RNA-seq
4
FAIRE-seq
Assay category
923
Transcription
674
DNA binding
245
DNA accessibility
17
DNA methylation
Target of assay
461
histone modification
460
histone
241
narrow histone mark
219
broad histone mark
155
control
58
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
Date released
452
February, 2021
193
May, 2020
186
October, 2019
170
August, 2017
163
June, 2019
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
69
November, 2017
64
July, 2019
December, 2017
39
November, 2019
38
May, 2021
26
November, 2018
24
May, 2022
15
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1859
bam
1736
bigWig
1076
tsv
948
bed narrowPeak
525
bigBed narrowPeak
329
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1852
Homo sapiens
Biosample type
1859
tissue
609
primary cell
582
cell line
in vitro differentiated cells
Organ
498
connective tissue
440
adipose tissue
429
pancreas
240
liver
226
brain
132
heart
114
limb
98
kidney
87
blood vessel
87
vasculature
66
bone element
44
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
1857
AMP
2
T1D
Genome assembly (visualization)
1667
GRCh38
1612
hg19
Lab
1834
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
December, 2017
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
1859 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
272
30
1
38
1
liver
147
84
2
1
bone tissue
58
body of pancreas
2
35
4
4
2
2
+ See 140 more…
See all biosamples
Download