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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
89
total RNA-seq
5
ATAC-seq
3
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
128
DNA binding
89
Transcription
9
DNA accessibility
2
DNA methylation
Target of assay
78
histone modification
77
histone
40
narrow histone mark
37
broad histone mark
25
control
25
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
550
February, 2021
392
November, 2017
283
May, 2020
246
October, 2019
228
August, 2017
218
June, 2019
192
May, 2021
164
July, 2018
120
May, 2019
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
54
November, 2019
December, 2017
49
April, 2018
34
December, 2018
30
January, 2019
24
May, 2022
15
October, 2017
14
March, 2020
12
August, 2021
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
233
fastq
228
bam
224
bigWig
99
bed narrowPeak
89
tsv
71
tagAlign
41
bigBed narrowPeak
40
bed broadPeak
26
bed bed3+
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
221
Homo sapiens
Biosample type
170
tissue
58
primary cell
in vitro differentiated cells
Organ
168
pancreas
29
epithelium
26
liver
17
adipose tissue
17
connective tissue
Project
228
AMP
Genome assembly (visualization)
203
hg19
200
GRCh38
Lab
228
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
December, 2017
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
228 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
22
89
1
1
liver
25
pancreas
14
white adipose tissue
12
adipose tissue
2
2
+ See 2 more…
primary cell
skeletal muscle myoblast
15
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
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