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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
98
total RNA-seq
29
ATAC-seq
16
pCHi-C
1
DNAme array
Assay category
122
DNA binding
98
Transcription
29
DNA accessibility
1
DNA methylation
Target of assay
119
histone
119
histone modification
66
broad histone mark
53
narrow histone mark
3
control
Date released
539
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
266
May, 2021
218
June, 2019
200
May, 2022
181
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
December, 2017
49
April, 2018
47
September, 2023
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
214
bigWig
192
bam
128
bed narrowPeak
94
tsv
84
tagAlign
2
bed bed3+
Organism
266
Homo sapiens
Biosample type
205
primary cell
in vitro differentiated cells
40
tissue
21
cell line
Organ
58
pancreas
21
epithelium
2
heart
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
152
T1D
114
AMP
Genome assembly (visualization)
227
hg19
192
GRCh38
Lab
187
Kyle Gaulton, UCSD
79
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
month_released!
December, 2017
biosample_type!
in vitro differentiated cells
organ_slims!
bone element
BIOSAMPLE
ASSAY
266 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
monocyte
85
52
13
1
1
CD8-positive, alpha-beta T cell
33
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
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tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
cell line
EndoC_BH1
1
4
16
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