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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
ChIP-seq
Assay category
396
DNA binding
Target of assay
827
histone modification
826
histone
430
narrow histone mark
425
transcription factor
396
broad histone mark
271
control
96
RNA binding protein
89
recombinant protein
31
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
89
August, 2017
66
May, 2021
50
November, 2017
37
April, 2019
36
May, 2019
32
October, 2019
20
May, 2024
19
October, 2018
17
September, 2018
10
October, 2017
8
June, 2019
6
November, 2019
December, 2017
4
January, 2019
2
August, 2021
Available data
343
bigWig
338
bed narrowPeak
292
bam
191
bigBed narrowPeak
133
tagAlign
83
fastq
34
bed broadPeak
14
bigBed broadPeak
7
bed bed3+
Organism
392
Homo sapiens
Biosample type
264
tissue
113
primary cell
in vitro differentiated cells
19
cell line
Organ
78
pancreas
70
brain
57
heart
45
blood vessel
vasculature
37
epithelium
34
limb
32
liver
24
connective tissue
20
adipose tissue
20
musculature of body
16
nerve
15
kidney
14
artery
9
vein
4
spleen
Project
352
AMP
44
T1D
Genome assembly (visualization)
310
GRCh38
288
hg19
Lab
311
AMP-T2D consortium
64
Kyle Gaulton, UCSD
20
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
month_released!
December, 2017
biosample_type!
in vitro differentiated cells
organ_slims!
vasculature
BIOSAMPLE
ASSAY
396 results
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Clear Filters
ChIP-seq
tissue
liver
22
left cardiac atrium
20
subcutaneous abdominal adipose tissue
20
tibial nerve
16
heart left ventricle
15
+ See 21 more…
primary cell
monocyte
44
CD8-positive, alpha-beta T cell
20
pancreatic endocrine cell
11
pancreatic ductal cell
6
skeletal muscle myoblast
6
+ See 10 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
4
See all biosamples
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