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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
Assay category
39
DNA binding
Target of assay
21
transcription factor
18
histone
18
histone modification
13
chromatin remodeller
11
narrow histone mark
7
broad histone mark
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
11
August, 2017
December, 2017
5
November, 2018
2
February, 2018
Available data
39
bam
39
bigWig
39
fastq
37
bed narrowPeak
25
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
4
bed bed3+
Organism
39
Homo sapiens
Biosample type
26
cell line
8
in vitro differentiated cells
tissue
5
primary cell
Organ
26
liver
6
connective tissue
4
epithelium
4
pancreas
Project
39
AMP
Genome assembly (visualization)
39
hg19
35
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
39
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
month_released!
December, 2017
biosample_type!
tissue
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
cell line
HepG2
26
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
2
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
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