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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
Assay category
23
DNA binding
Target of assay
19
transcription factor
13
histone
13
histone modification
12
chromatin remodeller
narrow histone mark
4
RNA binding protein
4
broad histone mark
1
recombinant protein
Date released
9
August, 2017
December, 2017
8
November, 2017
5
November, 2018
1
February, 2018
Available data
31
bam
31
bigWig
31
fastq
30
bed narrowPeak
23
bigBed narrowPeak
8
bed broadPeak
bigBed broadPeak
6
tagAlign
4
bed bed3+
Organism
23
Homo sapiens
Biosample type
13
cell line
7
in vitro differentiated cells
3
tissue
Organ
13
liver
6
connective tissue
3
pancreas
Project
23
AMP
Genome assembly (visualization)
23
hg19
21
GRCh38
Lab
23
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
23
inconsistent control read length
8
inconsistent control run_type
2
inconsistent assembly
month_released!
December, 2017
files.file_type!
bigBed broadPeak
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
23 results
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Clear Filters
ChIP-seq
cell line
HepG2
13
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
1
tissue
pancreas
3
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