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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
Assay category
28
DNA binding
Target of assay
921
histone modification
920
histone
469
narrow histone mark
450
broad histone mark
418
transcription factor
322
control
96
RNA binding protein
89
recombinant protein
28
chromatin remodeller
5
nucleotide modification
4
other context
4
other post-translational modification
Date released
11
November, 2017
7
November, 2018
6
January, 2019
December, 2017
2
August, 2017
2
December, 2018
Available data
33
bam
33
bed narrowPeak
33
bigWig
33
fastq
31
bigBed narrowPeak
5
bed broadPeak
bigBed broadPeak
Organism
28
Homo sapiens
Biosample type
26
cell line
2
in vitro differentiated cells
Organ
16
liver
10
blood
10
bodily fluid
2
connective tissue
Project
28
AMP
Genome assembly (visualization)
28
hg19
26
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
12
inconsistent control read length
8
inconsistent control run_type
month_released!
December, 2017
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
cell line
HepG2
16
GM12878
10
in vitro differentiated cells
adipocyte
2
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