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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
218
ChIP-seq
187
single cell RNA-seq
178
ATAC-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
236
DNA accessibility
218
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
186
histone
186
histone modification
101
broad histone mark
85
narrow histone mark
35
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
36
August, 2017
31
July, 2019
21
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
608
bigWig
604
bam
404
fastq
290
bed narrowPeak
270
tsv
153
zippedFastqFolder
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
975
Homo sapiens
Biosample type
2204
tissue
975
primary cell
340
in vitro differentiated cells
305
cell line
7
stem cell
Organ
341
epithelium
320
pancreas
24
connective tissue
20
kidney
16
vasculature
14
blood vessel
12
liver
10
brain
9
vein
8
blood
8
bodily fluid
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
446
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
522
hg19
427
GRCh38
Lab
411
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
31
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
month_released!
December, 2017
files.file_type!
bigBed narrowPeak
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
975 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
11
12
29
31
1
Langerhans cell
85
48
pancreatic beta cell
21
11
12
16
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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