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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
24
ChIP-seq
6
total RNA-seq
5
RRBS
4
Hi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
24
DNA binding
9
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
4
control
Date released
43
June, 2019
11
August, 2017
10
July, 2019
7
May, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
hic
1
txt
Organism
79
Homo sapiens
Biosample type
65
tissue
14
primary cell
Organ
920
pancreas
662
connective tissue
640
liver
492
epithelium
483
adipose tissue
353
kidney
344
heart
227
vasculature
221
blood vessel
168
brain
159
bone element
135
artery
122
limb
79
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
24
embryo
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
58
hg19
53
GRCh38
Lab
79
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
December, 2017
files.file_type!
hic
tagAlign
BIOSAMPLE
ASSAY
79 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
13
7
1
muscle of arm
17
skeletal muscle tissue
7
1
4
1
1
1
1
gastrocnemius medialis
1
4
psoas muscle
2
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
1
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