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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
total RNA-seq
3
small RNA-seq
2
RRBS
2
pCHi-C
1
WGBS
Assay category
172
Transcription
3
DNA methylation
Date released
144
May, 2020
9
August, 2021
8
July, 2019
5
December, 2019
5
January, 2019
2
March, 2020
1
August, 2017
1
February, 2020
1
November, 2018
1
October, 2019
Available data
618
bam
572
bigWig
402
fastq
391
bed narrowPeak
308
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
177
Homo sapiens
Biosample type
155
tissue
16
cell line
6
primary cell
Organ
481
connective tissue
423
pancreas
403
adipose tissue
177
liver
176
heart
162
epithelium
70
vasculature
69
blood vessel
58
artery
58
bone element
28
brain
28
kidney
14
embryo
13
musculature of body
8
limb
6
eye
5
nerve
3
spleen
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
177
AMP
Genome assembly (visualization)
164
hg19
163
GRCh38
Lab
168
AMP-T2D consortium
9
Bing Ren, UCSD
month_released!
December, 2017
BIOSAMPLE
ASSAY
177 results
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Clear Filters
total RNA-seq
small RNA-seq
RRBS
pCHi-C
WGBS
tissue
liver
147
1
1
1
right lobe of liver
3
2
cell line
HepG2
14
1
1
primary cell
hepatocyte
5
1
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