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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
53
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
66
Transcription
4
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
February, 2023
1
May, 2022
1
October, 2022
Available data
2609
bam
2474
bigWig
1531
bed narrowPeak
1183
tsv
901
bigBed narrowPeak
793
fastq
379
tagAlign
301
bed broadPeak
278
bigBed broadPeak
229
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
154
Homo sapiens
Biosample type
151
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
62
kidney
pancreas
4
skeleton
1
musculature of body
Project
155
AMP
Genome assembly (visualization)
4
hg19
Lab
95
AMP-T2D consortium
57
Katalin Susztak, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
month_released!
December, 2017
organ_slims!
pancreas
BIOSAMPLE
ASSAY
155 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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