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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ATAC-seq
20
total RNA-seq
3
ChIP-seq
2
Hi-C
Assay category
26
DNA accessibility
20
Transcription
3
DNA binding
2
3D chromatin structure
Target of assay
10
histone
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
715
February, 2021
318
November, 2017
314
May, 2020
266
August, 2021
259
May, 2021
212
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2019
1
August, 2022
Available data
49
bam
27
bed narrowPeak
21
bigWig
20
tsv
2
bedpe bed3+
2
hic
Organism
51
Homo sapiens
Biosample type
40
tissue
6
cell line
5
in vitro differentiated cells
Organ
45
pancreas
6
epithelium
1
adipose tissue
1
connective tissue
Project
51
AMP
Genome assembly (visualization)
49
hg19
47
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
month_released!
December, 2017
lab.title!
Bing Ren, UCSD
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
51 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
19
19
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
3
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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