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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
76
total RNA-seq
12
ATAC-seq
9
ChIP-seq
1
GRO-seq
1
pCHi-C
Assay category
76
Transcription
12
DNA accessibility
9
DNA binding
Target of assay
6
histone
6
histone modification
3
broad histone mark
3
control
3
narrow histone mark
Date released
150
February, 2021
December, 2017
13
February, 2018
8
August, 2021
8
February, 2023
3
May, 2021
1
January, 2018
Available data
89
bam
88
txt
79
bigWig
72
tsv
14
bed narrowPeak
14
fastq
4
bed bed3
Organism
183
Homo sapiens
Biosample type
158
tissue
16
in vitro differentiated cells
8
cell line
1
primary cell
Organ
946
pancreas
728
liver
684
connective tissue
505
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
24
embryo
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
182
AMP
1
T1D
Genome assembly (visualization)
90
hg19
86
GRCh38
1
hg18
Lab
182
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
86
inconsistent ontology term
month_released!
December, 2017
April, 2020
BIOSAMPLE
ASSAY
183 results
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RNA microarray
total RNA-seq
ATAC-seq
ChIP-seq
GRO-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
in vitro differentiated cells
pancreatic endoderm
4
9
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
megakaryocyte
1
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