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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
11
ATAC-seq
4
ChIP-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
27
DNA methylation
13
DNA accessibility
4
3D chromatin structure
4
DNA binding
Target of assay
7
control
Date released
713
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
314
August, 2021
306
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
93
bam
90
bigWig
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
12
bed narrowPeak
11
fastq
7
bigBed narrowPeak
bed bed3+
4
hdf5
Organism
113
Homo sapiens
Biosample type
81
tissue
32
primary cell
Organ
25
heart
17
connective tissue
16
epithelium
15
brain
15
pancreas
12
adipose tissue
11
kidney
10
musculature of body
10
vasculature
9
blood vessel
9
liver
5
limb
3
artery
2
pericardium
1
eye
Project
113
AMP
Genome assembly (visualization)
92
hg19
84
GRCh38
Lab
113
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
month_released!
December, 2017
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
113 results
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Clear Filters
total RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
ChIP-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
islet of Langerhans
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 26 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic alpha cell
2
+ See 19 more…
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