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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
Assay category
36
DNA binding
Target of assay
21
transcription factor
15
histone
15
histone modification
13
chromatin remodeller
8
narrow histone mark
7
broad histone mark
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
December, 2017
8
August, 2017
5
November, 2018
2
February, 2018
Available data
36
bam
36
bigWig
36
fastq
34
bed narrowPeak
26
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
4
bed bed3+
Organism
36
Homo sapiens
Biosample type
26
cell line
8
in vitro differentiated cells
1
primary cell
1
tissue
Organ
27
liver
pancreas
6
connective tissue
4
epithelium
Project
36
AMP
Genome assembly (visualization)
36
hg19
32
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
36
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
month_released!
December, 2017
organ_slims!
pancreas
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
cell line
HepG2
26
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
2
primary cell
skeletal muscle myoblast
1
tissue
liver
1
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