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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
5
MeRIP-seq
Assay category
89
DNA binding
Target of assay
951
histone modification
950
histone
483
narrow histone mark
467
transcription factor
466
broad histone mark
322
control
105
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
66
November, 2017
16
November, 2018
7
October, 2019
5
November, 2020
Available data
89
bam
88
bed narrowPeak
88
bigWig
82
fastq
81
bigBed narrowPeak
Organism
94
Homo sapiens
Biosample type
92
cell line
2
tissue
Organ
82
liver
7
kidney
5
pancreas
3
epithelium
Project
94
AMP
Genome assembly (visualization)
88
GRCh38
85
hg19
Lab
89
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
10
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
December, 2017
BIOSAMPLE
ASSAY
94 results
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ChIP-seq
MeRIP-seq
cell line
HepG2
82
EndoC_BH1
3
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
tissue
islet of Langerhans
2
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