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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
Assay category
31
DNA binding
Target of assay
905
histone modification
904
histone
459
narrow histone mark
445
broad histone mark
437
transcription factor
302
control
101
RNA binding protein
89
recombinant protein
31
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
15
November, 2017
7
November, 2018
6
January, 2019
2
December, 2017
December, 2018
1
August, 2017
Available data
31
bam
31
bed narrowPeak
31
bigBed narrowPeak
31
bigWig
31
fastq
5
bed broadPeak
5
bigBed broadPeak
Organism
31
Homo sapiens
Biosample type
28
cell line
in vitro differentiated cells
2
tissue
1
primary cell
Organ
22
liver
8
blood
8
bodily fluid
Project
31
AMP
Genome assembly (visualization)
31
hg19
29
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
2
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
8
inconsistent control run_type
month_released!
December, 2018
assay_title!
snATAC-seq
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
cell line
HepG2
20
GM12878
8
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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