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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
DNase-seq
13
ChIP-seq
2
WGBS
1
ATAC-seq
1
pCHi-C
Assay category
20
DNA accessibility
13
DNA binding
2
DNA methylation
Target of assay
6
histone
6
histone modification
4
broad histone mark
4
control
3
other context
3
other post-translational modification
3
transcription factor
2
narrow histone mark
Date released
18
June, 2019
9
November, 2018
December, 2018
7
January, 2019
1
March, 2020
1
October, 2017
Available data
35
bam
31
bigWig
29
bed narrowPeak
28
bigBed narrowPeak
19
bed bed3+
19
bed broadPeak
19
bigBed broadPeak
17
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
tsv
Organism
36
Homo sapiens
Biosample type
36
tissue
Organ
865
pancreas
789
liver
665
connective tissue
490
adipose tissue
433
epithelium
387
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
61
eye
43
nerve
42
blood
42
bodily fluid
31
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
36
AMP
Genome assembly (visualization)
31
GRCh38
29
hg19
Lab
36
AMP-T2D consortium
month_released!
December, 2018
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
36 results
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DNase-seq
ChIP-seq
WGBS
ATAC-seq
pCHi-C
tissue
spleen
1
13
2
1
1
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
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