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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
56
ChIP-seq
6
WGBS
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
56
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
45
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
October, 2017
1
October, 2019
Available data
424
bam
408
bigWig
401
tsv
27
fastq
8
tagAlign
7
bed narrowPeak
5
bigBed narrowPeak
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
472
Homo sapiens
Biosample type
470
tissue
2
primary cell
1
in vitro differentiated cells
Organ
847
pancreas
626
connective tissue
473
adipose tissue
451
liver
427
epithelium
371
heart
330
kidney
280
brain
226
vasculature
222
blood vessel
136
artery
121
limb
87
musculature of body
75
bone element
60
eye
43
nerve
28
embryo
22
vein
20
lung
18
ureter
16
blood
16
bodily fluid
16
skeleton
15
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
473
AMP
Genome assembly (visualization)
408
hg19
406
GRCh38
Lab
473
AMP-T2D consortium
Audit category:
inconsistent ontology term
month_released!
December, 2018
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
473 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
1
omental fat pad
5
8
1
1
2
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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