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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
ChIP-seq
89
total RNA-seq
5
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
150
DNA binding
89
Transcription
7
DNA accessibility
2
DNA methylation
Target of assay
102
histone modification
101
histone
51
narrow histone mark
49
broad histone mark
46
transcription factor
7
RNA binding protein
3
chromatin remodeller
2
control
Date released
568
February, 2021
278
November, 2017
276
May, 2021
248
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
77
December, 2017
75
November, 2018
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
35
February, 2023
31
February, 2018
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
2
March, 2019
1
March, 2023
Available data
248
bam
248
fastq
246
bigWig
117
bed narrowPeak
89
tsv
37
bigBed narrowPeak
33
bed bed3+
19
bed broadPeak
17
tagAlign
13
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
242
Homo sapiens
Biosample type
158
tissue
49
in vitro differentiated cells
41
primary cell
Organ
152
pancreas
65
connective tissue
19
liver
17
epithelium
16
adipose tissue
Project
248
AMP
Genome assembly (visualization)
275
hg19
248
GRCh38
Lab
248
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
inconsistent control run_type
month_released!
December, 2018
audit.WARNING.category!
inconsistent control run_type
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
248 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
tissue
islet of Langerhans
21
89
1
liver
18
pancreas
12
white adipose tissue
12
adipose tissue
1
2
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in vitro differentiated cells
adipocyte
48
1
primary cell
pancreatic endocrine cell
12
skeletal muscle myoblast
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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