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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
ChIP-seq
9
WGBS
6
RRBS
4
DNase-seq
2
ATAC-seq
Assay category
201
DNA binding
15
DNA methylation
6
DNA accessibility
Target of assay
132
histone modification
131
histone
77
broad histone mark
53
narrow histone mark
40
transcription factor
29
control
6
RNA binding protein
3
chromatin remodeller
Date released
683
February, 2021
402
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
222
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
80
April, 2019
77
November, 2018
50
March, 2020
47
September, 2023
40
September, 2020
39
February, 2018
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
118
fastq
113
bam
112
bigWig
92
bed narrowPeak
69
tagAlign
29
bed broadPeak
24
bigBed narrowPeak
15
bigBed broadPeak
14
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
Organism
222
Homo sapiens
Biosample type
137
tissue
68
in vitro differentiated cells
17
primary cell
Organ
pancreas
125
connective tissue
57
adipose tissue
54
liver
29
epithelium
26
musculature of body
Project
222
AMP
Genome assembly (visualization)
116
hg19
96
GRCh38
Lab
222
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
month_released!
December, 2018
audit.WARNING.category!
inconsistent control run_type
organ_slims!
pancreas
BIOSAMPLE
ASSAY
222 results
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Clear Filters
ChIP-seq
WGBS
RRBS
DNase-seq
ATAC-seq
tissue
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
12
adipose tissue
2
3
+ See 2 more…
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
14
1
2
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