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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
380
ChIP-seq
104
total RNA-seq
13
ATAC-seq
3
Hi-C
2
DNase-seq
1
pCHi-C
Assay category
380
DNA binding
104
Transcription
15
DNA accessibility
3
3D chromatin structure
Target of assay
327
transcription factor
85
recombinant protein
60
RNA binding protein
37
histone
37
histone modification
28
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
93
February, 2021
54
November, 2018
December, 2018
23
August, 2021
20
January, 2019
20
October, 2019
14
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
490
bigWig
482
bam
373
bed narrowPeak
340
fastq
324
bigBed narrowPeak
105
tsv
59
bed broadPeak
59
bigBed broadPeak
17
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
503
Homo sapiens
Biosample type
1752
tissue
628
primary cell
503
cell line
297
in vitro differentiated cells
3
stem cell
Organ
330
liver
64
artery
64
blood vessel
64
heart
64
vasculature
58
pancreas
52
epithelium
28
blood
28
bodily fluid
12
kidney
8
embryo
Project
499
AMP
4
T1D
Genome assembly (visualization)
503
hg19
437
GRCh38
Lab
488
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
60
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
December, 2018
BIOSAMPLE
ASSAY
503 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
pCHi-C
cell line
HepG2
322
5
1
1
1
smooth muscle cell of the coronary artery
4
52
8
EndoC_BH1
13
33
3
1
GM12878
27
1
H1-hESC
8
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