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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
Assay category
151
DNA accessibility
DNA binding
Date released
66
August, 2021
65
February, 2023
20
May, 2022
Available data
bam
1779
bigWig
1600
tsv
500
fastq
492
bed narrowPeak
241
bigBed narrowPeak
220
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
151
Homo sapiens
Biosample type
147
tissue
4
in vitro differentiated cells
Organ
64
kidney
35
artery
35
blood vessel
35
heart
35
vasculature
27
eye
20
liver
12
epithelium
3
connective tissue
1
adipose tissue
Project
151
AMP
Genome assembly (visualization)
99
GRCh38
52
hg19
Lab
64
Katalin Susztak, Upenn
63
AMP-T2D consortium
20
Karen Mohlke, UNC
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
month_released!
December, 2018
files.file_type!
bam
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
151 results
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ATAC-seq
tissue
kidney
64
coronary artery
35
liver
20
retina
15
pigmented layer of retina
12
+ See 1 more…
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
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