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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
85
ATAC-seq
Assay category
92
DNA binding
85
DNA accessibility
Target of assay
87
histone
87
histone modification
52
broad histone mark
35
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
August, 2021
65
February, 2023
40
May, 2024
30
May, 2021
20
August, 2017
20
May, 2022
1
April, 2019
1
November, 2017
Available data
bam
3092
bigWig
1681
bed narrowPeak
1477
tsv
1323
fastq
1012
bigBed narrowPeak
374
tagAlign
322
bed broadPeak
285
bigBed broadPeak
268
bed bed3+
153
zippedFastqFolder
104
txt
36
bed bedMethyl
36
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
177
Homo sapiens
Biosample type
145
tissue
30
primary cell
2
in vitro differentiated cells
Organ
76
heart
35
artery
35
blood vessel
35
vasculature
27
eye
20
liver
13
musculature of body
12
epithelium
6
pancreas
2
adipose tissue
2
connective tissue
1
brain
Project
177
AMP
Genome assembly (visualization)
102
hg19
75
GRCh38
Lab
85
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
30
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
month_released!
December, 2018
August, 2021
files.file_type!
bam
BIOSAMPLE
ASSAY
177 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
left cardiac atrium
40
coronary artery
35
liver
20
retina
15
skeletal muscle tissue
13
+ See 6 more…
primary cell
CD8-positive, alpha-beta T cell
30
in vitro differentiated cells
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
See all biosamples
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