Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
105
ChIP-seq
Assay category
151
DNA accessibility
105
DNA binding
Target of assay
89
histone
89
histone modification
53
broad histone mark
36
narrow histone mark
16
transcription factor
6
RNA binding protein
Date released
80
August, 2021
65
February, 2023
40
May, 2024
30
May, 2021
20
August, 2017
20
May, 2022
1
April, 2019
Available data
bam
2917
bigWig
1584
bed narrowPeak
1574
tsv
1302
fastq
885
bigBed narrowPeak
280
tagAlign
275
bed broadPeak
247
bigBed broadPeak
238
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
bedpe bed3+
23
hic
11
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
256
Homo sapiens
Biosample type
208
tissue
30
primary cell
14
cell line
4
in vitro differentiated cells
Organ
76
heart
64
kidney
35
artery
35
blood vessel
35
vasculature
34
liver
27
eye
13
musculature of body
12
epithelium
6
pancreas
4
connective tissue
2
adipose tissue
brain
Project
256
AMP
Genome assembly (visualization)
139
GRCh38
117
hg19
Lab
84
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
30
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
month_released!
December, 2018
files.file_type!
bam
organ_slims!
brain
BIOSAMPLE
ASSAY
256 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney
64
left cardiac atrium
40
coronary artery
35
liver
20
retina
15
+ See 6 more…
primary cell
CD8-positive, alpha-beta T cell
30
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
Download