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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
48
snATAC-seq
42
ATAC-seq
41
WGBS
3
Hi-C
Assay category
177
Transcription
90
DNA accessibility
41
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
59
September, 2020
39
February, 2021
August, 2020
3
October, 2022
Available data
162
fastq
153
zippedFastqFolder
tsv
3
bedpe bed3+
3
bigWig
3
cool
3
hic
Organism
311
Homo sapiens
Biosample type
311
primary cell
Organ
139
epithelium
139
pancreas
Project
311
HPAP
Genome assembly (visualization)
3
GRCh38
3
hg19
Lab
2389
AMP-T2D consortium
311
Klaus Kaestner, Upenn
247
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
month_released!
December, 2018
August, 2020
files.file_type!
tsv
BIOSAMPLE
ASSAY
311 results
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Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
24
25
1
pancreatic beta cell
11
14
16
1
exocrine cell
39
pancreatic acinar cell
4
1
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