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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
total RNA-seq
85
single cell RNA-seq
62
ATAC-seq
48
snATAC-seq
47
WGBS
3
Hi-C
Assay category
197
Transcription
110
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
174
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
August, 2020
3
October, 2022
Available data
162
fastq
153
zippedFastqFolder
23
bigWig
20
bed narrowPeak
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
357
Homo sapiens
Biosample type
317
primary cell
40
tissue
Organ
145
epithelium
145
pancreas
40
liver
Project
317
HPAP
40
AMP
Genome assembly (visualization)
23
hg19
3
GRCh38
Lab
3877
AMP-T2D consortium
343
Kyle Gaulton, UCSD
317
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
month_released!
December, 2018
August, 2020
BIOSAMPLE
ASSAY
357 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
24
31
1
pancreatic beta cell
11
14
16
1
exocrine cell
39
pancreatic acinar cell
4
1
tissue
liver
20
20
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