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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1011
total RNA-seq
689
ChIP-seq
254
ATAC-seq
174
single cell RNA-seq
151
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
12
small RNA-seq
10
RRBS
9
Hi-C
5
pCHi-C
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1197
Transcription
689
DNA binding
436
DNA accessibility
37
DNA methylation
9
3D chromatin structure
Target of assay
442
histone modification
441
histone
233
broad histone mark
208
narrow histone mark
158
control
91
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
229
August, 2021
193
May, 2020
156
October, 2019
138
June, 2019
120
July, 2018
94
February, 2023
87
May, 2019
80
April, 2019
74
October, 2018
66
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
March, 2020
24
November, 2018
19
April, 2020
15
May, 2023
13
February, 2020
8
January, 2021
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1665
bam
1556
bigWig
1027
tsv
787
bed narrowPeak
442
bigBed narrowPeak
358
fastq
178
bed bed3+
177
bed broadPeak
157
txt
149
bigBed broadPeak
120
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
6
csv
4
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
Organism
2458
Homo sapiens
Biosample type
2467
tissue
1066
primary cell
623
cell line
386
in vitro differentiated cells
6
stem cell
Organ
546
connective tissue
496
pancreas
487
adipose tissue
358
liver
306
heart
299
kidney
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
77
musculature of body
73
artery
56
eye
43
nerve
19
lung
18
ureter
17
spleen
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
2374
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
1644
GRCh38
1591
hg19
Lab
2115
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
86
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
December, 2018
March, 2020
organ_slims!
brain
BIOSAMPLE
ASSAY
2467 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
small RNA-seq
RRBS
Hi-C
pCHi-C
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
296
69
65
1
7
1
3
4
4
1
adipose tissue
382
2
3
3
liver
166
145
20
1
2
3
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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