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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
3
WGBS
2
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
32
DNA binding
3
DNA accessibility
3
DNA methylation
Target of assay
19
control
17
transcription factor
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
18
August, 2017
18
October, 2018
1
August, 2018
1
November, 2018
1
October, 2017
Available data
437
bam
420
bigWig
401
tsv
39
fastq
8
bed narrowPeak
8
tagAlign
6
bed bed3+
5
bigBed narrowPeak
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
39
Homo sapiens
Biosample type
38
tissue
1
in vitro differentiated cells
Organ
463
pancreas
407
liver
253
epithelium
92
connective tissue
39
adipose tissue
27
embryo
25
blood
25
bodily fluid
18
brain
17
spleen
4
vasculature
2
blood vessel
2
musculature of body
Project
39
AMP
Genome assembly (visualization)
18
GRCh38
16
hg19
Lab
39
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
December, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
tissue
white adipose tissue
12
subcutaneous adipose tissue
10
1
omental fat pad
8
1
1
adipose tissue
2
3
in vitro differentiated cells
white fat cell
1
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