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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
56
total RNA-seq
46
ATAC-seq
8
snATAC-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
67
DNA binding
58
DNA accessibility
58
Transcription
Target of assay
31
transcription factor
21
histone
21
histone modification
15
control
14
broad histone mark
9
RNA binding protein
8
chromatin remodeller
7
narrow histone mark
Date released
66
February, 2021
35
February, 2023
December, 2018
26
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
January, 2018
Available data
135
bam
113
bigWig
101
bed narrowPeak
58
tsv
52
bigBed narrowPeak
33
fastq
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
183
Homo sapiens
Biosample type
100
cell line
73
tissue
10
primary cell
Organ
946
pancreas
790
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
43
nerve
42
blood
42
bodily fluid
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
175
AMP
8
T1D
Genome assembly (visualization)
155
GRCh38
121
hg19
Lab
175
AMP-T2D consortium
8
Kyle Gaulton, UCSD
month_released!
December, 2018
BIOSAMPLE
ASSAY
183 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
33
1
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
pulmonary artery
2
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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