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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
9
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
6
histone
6
histone modification
broad histone mark
4
control
3
other context
3
other post-translational modification
3
transcription factor
2
narrow histone mark
Date released
9
November, 2018
December, 2018
3
January, 2019
1
March, 2020
1
October, 2017
Available data
13
bam
13
fastq
9
bigWig
7
bed narrowPeak
6
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
14
Homo sapiens
Biosample type
14
tissue
Organ
868
pancreas
748
liver
640
connective tissue
480
epithelium
471
adipose tissue
336
heart
292
kidney
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
61
eye
42
blood
42
bodily fluid
33
embryo
27
nerve
20
lung
18
ureter
16
skeleton
14
spleen
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
14
AMP
Genome assembly (visualization)
9
GRCh38
7
hg19
Lab
14
AMP-T2D consortium
month_released!
December, 2018
target.investigated_as!
broad histone mark
award.project!
KPMP
BIOSAMPLE
ASSAY
14 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
tissue
spleen
9
2
1
1
1
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