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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
ChIP-seq
47
total RNA-seq
32
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
135
DNA binding
47
Transcription
33
DNA accessibility
Target of assay
110
histone
110
histone modification
broad histone mark
53
narrow histone mark
46
transcription factor
35
control
11
RNA binding protein
3
chromatin remodeller
Date released
54
May, 2021
48
August, 2017
35
August, 2021
31
February, 2018
28
December, 2017
11
February, 2023
8
February, 2021
4
January, 2018
2
October, 2019
1
August, 2018
1
March, 2020
Available data
153
bam
129
bigWig
106
fastq
82
bed narrowPeak
41
tsv
23
tagAlign
19
bed bed3+
10
bigBed narrowPeak
6
bed bedgraph
5
bed bed3
2
txt
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
223
Homo sapiens
Biosample type
2376
tissue
920
primary cell
529
cell line
223
in vitro differentiated cells
8
stem cell
Organ
73
connective tissue
19
embryo
12
epithelium
8
liver
3
pancreas
1
adipose tissue
1
heart
Project
223
AMP
Genome assembly (visualization)
153
hg19
129
GRCh38
4
hg18
Lab
180
AMP-T2D consortium
37
Kyle Gaulton, UCSD
6
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
December, 2018
target.investigated_as!
broad histone mark
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
223 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
47
5
8
1
1
embryonic stem cell
29
7
6
1
neural progenitor cell
14
7
10
pancreatic endoderm
14
4
1
definitive endodermal cell
6
2
1
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