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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
53
ChIP-seq
16
pCHi-C
8
snATAC-seq
Assay category
98
Transcription
53
DNA binding
8
DNA accessibility
Target of assay
114
histone
114
histone modification
broad histone mark
50
narrow histone mark
3
control
Date released
122
May, 2021
45
May, 2020
8
January, 2021
Available data
151
bigWig
136
bam
96
tsv
50
bed narrowPeak
40
tagAlign
2
bed bed3+
Organism
175
Homo sapiens
Biosample type
175
primary cell
52
tissue
37
in vitro differentiated cells
5
cell line
Organ
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
160
T1D
15
AMP
Genome assembly (visualization)
151
hg19
136
GRCh38
Lab
466
AMP-T2D consortium
324
Klaus Kaestner, Upenn
175
Kyle Gaulton, UCSD
1
ITG
Audit category:
5
inconsistent ontology term
month_released!
December, 2018
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
175 results
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total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
primary cell
monocyte
53
40
1
CD8-positive, alpha-beta T cell
4
13
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
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