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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
DNase-seq
17
total RNA-seq
4
ATAC-seq
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
20
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
28
May, 2019
16
October, 2017
14
July, 2019
12
February, 2020
2
March, 2020
1
February, 2023
Available data
207
bam
186
bigWig
171
bed narrowPeak
118
tagAlign
95
bigBed narrowPeak
22
tsv
19
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
250
Homo sapiens
Biosample type
234
tissue
16
primary cell
Organ
936
pancreas
777
liver
672
connective tissue
499
epithelium
486
adipose tissue
362
heart
269
kidney
250
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
61
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
250
AMP
Genome assembly (visualization)
181
GRCh38
138
hg19
Lab
250
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
December, 2019
assay_title!
small RNA-seq
DNase-seq
BIOSAMPLE
ASSAY
250 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
1
1
1
layer of hippocampus
23
substantia nigra
16
1
caudate nucleus
15
1
temporal lobe
15
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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