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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
221
ChIP-seq
Assay category
221
DNA binding
Target of assay
214
histone
214
histone modification
134
narrow histone mark
80
broad histone mark
5
transcription factor
2
control
Date released
84
May, 2021
40
October, 2019
38
August, 2017
27
May, 2020
18
November, 2017
6
October, 2017
5
February, 2021
3
August, 2021
Available data
2757
bigWig
2729
bam
1467
bed narrowPeak
1270
tsv
946
bigBed narrowPeak
890
fastq
297
bed broadPeak
261
bigBed broadPeak
225
bed bed3+
221
tagAlign
19
bed bedMethyl
19
bigBed bedMethyl
18
hic
15
bedpe bed3+
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
txt
Organism
215
Homo sapiens
Biosample type
105
tissue
99
primary cell
17
cell line
in vitro differentiated cells
Organ
43
brain
42
liver
13
musculature of body
12
pancreas
4
artery
4
blood vessel
4
heart
4
vasculature
3
epithelium
1
adipose tissue
1
connective tissue
1
pituitary gland
Project
137
AMP
84
T1D
Genome assembly (visualization)
228
GRCh38
221
hg19
Lab
137
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
month_released!
December, 2019
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
221 results
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ChIP-seq
tissue
liver
27
skeletal muscle tissue
13
brain
6
islet of Langerhans
6
pancreas
6
+ See 43 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
3
cell line
HepG2
12
smooth muscle cell of the coronary artery
4
iPSC derived cell line
1
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