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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
240
ChIP-seq
147
total RNA-seq
97
single cell RNA-seq
84
ATAC-seq
22
DNase-seq
10
RRBS
9
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
246
Transcription
240
DNA binding
107
DNA accessibility
10
DNA methylation
9
3D chromatin structure
Target of assay
230
histone
230
histone modification
118
broad histone mark
112
narrow histone mark
10
RNA binding protein
control
10
transcription factor
1
chromatin remodeller
Date released
181
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
46
August, 2017
43
April, 2018
40
June, 2019
28
July, 2019
26
October, 2019
6
November, 2017
6
November, 2020
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
February, 2021
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
Available data
581
bigWig
562
bam
288
bed narrowPeak
244
tsv
222
fastq
102
bigBed narrowPeak
98
tagAlign
42
bed broadPeak
42
bigBed broadPeak
30
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
613
Homo sapiens
Biosample type
1752
tissue
613
primary cell
517
cell line
292
in vitro differentiated cells
2
stem cell
Organ
220
epithelium
185
pancreas
34
connective tissue
29
vasculature
25
kidney
24
blood vessel
17
vein
15
brain
12
musculature of body
10
heart
8
liver
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
430
AMP
180
T1D
3
HPAP
Genome assembly (visualization)
613
hg19
528
GRCh38
Lab
398
AMP-T2D consortium
212
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
42
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
December, 2019
target.investigated_as!
control
BIOSAMPLE
ASSAY
613 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic beta cell
7
10
12
7
1
CD8-positive, alpha-beta T cell
30
4
2
pancreatic alpha cell
7
10
12
6
1
pancreatic ductal cell
13
4
10
4
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