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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
131
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
1
DNase-seq
Assay category
161
DNA binding
131
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
92
histone
92
histone modification
46
broad histone mark
45
narrow histone mark
37
transcription factor
32
control
6
RNA binding protein
3
chromatin remodeller
Date released
85
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
December, 2019
1
August, 2018
Available data
291
bam
254
bigWig
141
fastq
132
bed narrowPeak
129
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
345
Homo sapiens
Biosample type
2682
tissue
844
primary cell
657
cell line
345
in vitro differentiated cells
10
stem cell
Organ
97
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
345
AMP
Genome assembly (visualization)
292
hg19
265
GRCh38
4
hg18
Lab
338
AMP-T2D consortium
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
113
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
December, 2019
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
345 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
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