Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
88
ChIP-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
Assay category
136
Transcription
88
DNA binding
DNA accessibility
4
3D chromatin structure
Target of assay
37
control
34
histone
34
histone modification
19
broad histone mark
17
transcription factor
15
narrow histone mark
5
RNA binding protein
Date released
122
May, 2021
25
August, 2017
23
February, 2018
22
February, 2021
17
August, 2021
9
December, 2017
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
December, 2019
1
August, 2018
Available data
273
bam
246
bigWig
140
fastq
129
tsv
bed narrowPeak
40
tagAlign
21
bed bed3+
14
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
Organism
239
Homo sapiens
Biosample type
1709
tissue
569
primary cell
239
cell line
239
in vitro differentiated cells
8
stem cell
Organ
37
connective tissue
15
embryo
6
epithelium
1
adipose tissue
1
heart
1
liver
1
pancreas
Project
239
AMP
Genome assembly (visualization)
145
hg19
137
GRCh38
4
hg18
Lab
195
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
98
inconsistent ontology term
Audit category:
6
missing controlled_by
month_released!
December, 2019
files.file_type!
bed narrowPeak
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
239 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
7
38
1
adipocyte
5
25
1
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
8
+ See 27 more…
See all biosamples
Download