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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1408
total RNA-seq
546
ChIP-seq
312
single cell RNA-seq
253
ATAC-seq
85
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
312
Transcription
Target of assay
3
control
Date released
106
August, 2021
July, 2018
47
September, 2023
43
April, 2018
40
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
3
August, 2018
December, 2019
3
July, 2019
3
June, 2018
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
155
tsv
80
fastq
52
bam
52
bigWig
52
zippedFastqFolder
13
txt
8
csv
Organism
312
Homo sapiens
Biosample type
173
tissue
139
primary cell
Organ
93
heart
63
kidney
37
epithelium
37
pancreas
9
lung
6
blood vessel
6
vasculature
3
brain
2
artery
2
connective tissue
1
liver
1
musculature of body
Project
171
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
52
GRCh38
52
hg19
Lab
160
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
5
audit script error
1
inconsistent ontology term
month_released!
December, 2019
July, 2018
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
312 results
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single cell RNA-seq
tissue
kidney
63
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
85
pancreatic acinar cell
7
pancreatic delta cell
7
pancreatic ductal cell
7
pancreatic cell
6
+ See 9 more…
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