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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
Hi-C
8
single cell RNA-seq
Assay category
16
3D chromatin structure
8
Transcription
Date released
9
March, 2020
6
February, 2021
4
October, 2019
2
August, 2021
1
March, 2023
1
November, 2018
1
September, 2018
Available data
2698
bam
2541
bigWig
1603
bed narrowPeak
1174
tsv
951
bigBed narrowPeak
887
fastq
379
tagAlign
301
bed broadPeak
278
bigBed broadPeak
244
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
24
Homo sapiens
Biosample type
14
tissue
5
primary cell
4
in vitro differentiated cells
1
cell line
Organ
pancreas
6
epithelium
6
kidney
3
blood vessel
3
heart
3
liver
3
vasculature
2
musculature of body
2
vein
Project
23
AMP
1
ITG
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
21
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
6
audit script error
4
inconsistent ontology term
month_released!
December, 2019
organ_slims!
pancreas
BIOSAMPLE
ASSAY
24 results
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Hi-C
single cell RNA-seq
tissue
kidney
1
5
liver
1
1
psoas muscle
2
aorta
1
heart
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
2
pancreatic cell
2
chondrocytes
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
See all biosamples
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