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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
2
Hi-C
Assay category
20
DNA binding
2
3D chromatin structure
Target of assay
11
histone
11
histone modification
6
broad histone mark
5
narrow histone mark
5
transcription factor
4
control
Date released
12
November, 2017
8
February, 2021
1
August, 2021
1
November, 2019
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
22
Homo sapiens
Biosample type
248
tissue
104
primary cell
47
in vitro differentiated cells
22
cell line
Organ
13
liver
6
artery
6
blood vessel
6
heart
6
vasculature
1
epithelium
1
pancreas
Project
22
AMP
Genome assembly (visualization)
19
hg19
14
GRCh38
Lab
21
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
11
inconsistent control read length
month_released!
December, 2019
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
Hi-C
cell line
HepG2
12
1
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
EndoC_BH1
1
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