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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
229
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
RRBS
Assay category
413
Transcription
288
DNA accessibility
49
DNA methylation
6
3D chromatin structure
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
July, 2019
24
June, 2019
10
October, 2019
8
January, 2021
7
August, 2020
6
August, 2017
6
November, 2020
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
344
bam
339
bigWig
315
fastq
247
tsv
153
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
30
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
773
Homo sapiens
Biosample type
1790
tissue
773
primary cell
194
in vitro differentiated cells
178
cell line
7
stem cell
Organ
296
epithelium
276
pancreas
19
connective tissue
14
kidney
9
vasculature
8
blood
8
bodily fluid
7
blood vessel
5
brain
5
vein
3
heart
3
liver
1
bone element
1
bone marrow
1
eye
1
musculature of body
Project
328
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
345
hg19
306
GRCh38
Lab
326
AMP-T2D consortium
324
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
27
inconsistent ontology term
month_released!
December, 2019
July, 2019
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
773 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
DNAme array
FAIRE-seq
RRBS
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
31
1
pancreatic beta cell
21
23
12
16
1
monocyte
54
15
1
1
exocrine cell
39
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