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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1484
total RNA-seq
525
ATAC-seq
357
single cell RNA-seq
212
DNase-seq
85
RNA microarray
84
snATAC-seq
63
WGBS
57
pCHi-C
26
Hi-C
10
MeRIP-seq
6
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
357
Transcription
Date released
106
August, 2021
48
July, 2018
47
September, 2023
43
April, 2018
40
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
3
August, 2018
December, 2019
July, 2019
3
June, 2018
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
200
tsv
128
fastq
97
bam
97
bigWig
52
zippedFastqFolder
13
txt
8
csv
Organism
357
Homo sapiens
Biosample type
184
primary cell
173
tissue
Organ
93
heart
74
pancreas
70
epithelium
63
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
2
artery
1
liver
1
musculature of body
Project
216
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
97
GRCh38
97
hg19
Lab
205
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
inconsistent ontology term
5
audit script error
month_released!
December, 2019
July, 2019
BIOSAMPLE
ASSAY
357 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 12 more…
tissue
kidney
63
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
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