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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1142
total RNA-seq
1105
ChIP-seq
296
ATAC-seq
179
DNase-seq
173
single cell RNA-seq
85
RNA microarray
30
pCHi-C
28
snATAC-seq
16
Hi-C
15
WGBS
5
RRBS
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
Assay category
1315
Transcription
1105
DNA binding
505
DNA accessibility
20
DNA methylation
16
3D chromatin structure
Target of assay
740
histone modification
739
histone
379
narrow histone mark
359
broad histone mark
224
control
143
transcription factor
39
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
571
February, 2021
352
August, 2017
271
August, 2021
250
October, 2019
193
May, 2020
172
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
111
February, 2023
91
December, 2017
82
November, 2017
80
April, 2019
July, 2019
74
October, 2018
66
May, 2022
48
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
2134
bam
1968
bigWig
1156
tsv
1109
bed narrowPeak
576
bigBed narrowPeak
518
fastq
278
tagAlign
230
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
160
txt
64
xls
17
bedpe bed3+
15
hic
11
bed bedMethyl
11
bigBed bedMethyl
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
3080
Homo sapiens
Biosample type
2697
tissue
1052
primary cell
662
cell line
392
in vitro differentiated cells
10
stem cell
Organ
634
connective tissue
502
pancreas
479
adipose tissue
368
liver
294
heart
292
kidney
254
brain
158
bone element
126
blood vessel
126
vasculature
117
limb
75
musculature of body
72
artery
56
eye
43
nerve
38
epithelium
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2992
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
2063
GRCh38
1992
hg19
4
hg18
Lab
2683
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
204
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
month_released!
December, 2019
July, 2019
BIOSAMPLE
ASSAY
3089 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
WGBS
RRBS
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
FAIRE-seq
tissue
islet of Langerhans
298
71
68
1
4
7
3
4
1
adipose tissue
382
2
3
1
3
liver
165
145
20
2
1
1
1
3
1
kidney
49
27
75
13
63
6
1
bone element
84
+ See 169 more…
in vitro differentiated cells
adipocyte
5
67
8
1
1
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
+ See 31 more…
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