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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
total RNA-seq
24
ChIP-seq
6
WGBS
5
DNase-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
29
Transcription
24
DNA binding
7
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
80
May, 2022
61
September, 2018
52
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
58
bam
51
bigWig
35
tsv
21
bed narrowPeak
14
bigBed narrowPeak
6
fastq
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
hic
1
tar
Organism
67
Homo sapiens
Biosample type
39
primary cell
28
cell line
Organ
459
connective tissue
387
adipose tissue
150
bone element
113
blood vessel
113
vasculature
92
artery
86
brain
75
limb
74
heart
67
epithelium
50
pancreas
42
nerve
38
kidney
21
eye
21
vein
10
liver
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
Project
61
AMP
6
HPAP
Genome assembly (visualization)
53
hg19
49
GRCh38
Lab
61
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
27
inconsistent ontology term
1
audit script error
month_released!
December, 2019
BIOSAMPLE
ASSAY
67 results
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total RNA-seq
ChIP-seq
WGBS
DNase-seq
ATAC-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
pancreatic alpha cell
6
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
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cell line
EndoC_BH1
26
glomerular visceral epithelial cell
1
1
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