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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
total RNA-seq
70
ChIP-seq
43
single cell RNA-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
163
Transcription
70
DNA binding
10
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
245
bam
238
bigWig
158
tsv
132
fastq
73
bed narrowPeak
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
250
Homo sapiens
Biosample type
146
tissue
61
cell line
43
primary cell
Organ
159
pancreas
53
liver
32
epithelium
15
blood
15
bodily fluid
9
spleen
3
connective tissue
2
brain
1
adipose tissue
Project
250
AMP
Genome assembly (visualization)
237
GRCh38
229
hg19
Lab
250
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
December, 2019
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
250 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
120
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 3 more…
cell line
HepG2
45
1
GM12878
15
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
4
pancreatic cell
4
pancreatic delta cell
4
+ See 7 more…
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