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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
397
DNA binding
10
DNA accessibility
7
DNA methylation
Target of assay
303
transcription factor
81
recombinant protein
75
histone
75
histone modification
56
RNA binding protein
45
broad histone mark
30
narrow histone mark
22
chromatin remodeller
16
control
5
other context
5
other post-translational modification
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
479
bam
414
bigWig
412
fastq
386
bed narrowPeak
385
bigBed narrowPeak
79
bed broadPeak
78
tagAlign
73
bigBed broadPeak
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
414
Homo sapiens
Biosample type
325
cell line
80
tissue
9
primary cell
Organ
320
liver
68
brain
12
blood
12
bodily fluid
7
pancreas
6
epithelium
6
spleen
6
vasculature
3
blood vessel
1
adipose tissue
1
connective tissue
Project
414
AMP
Genome assembly (visualization)
358
GRCh38
352
hg19
Lab
414
AMP-T2D consortium
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
December, 2019
BIOSAMPLE
ASSAY
414 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
cell line
HepG2
312
1
GM12878
12
tissue
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
substantia nigra
11
cingulate gyrus
6
+ See 8 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
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