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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
446
ChIP-seq
8
ATAC-seq
5
total RNA-seq
Assay category
446
DNA binding
8
DNA accessibility
5
Transcription
Target of assay
258
transcription factor
107
histone
107
histone modification
78
control
66
recombinant protein
64
broad histone mark
43
RNA binding protein
43
narrow histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
437
bam
374
bigWig
371
fastq
346
bed narrowPeak
339
bigBed narrowPeak
92
tagAlign
74
bed broadPeak
64
bigBed broadPeak
5
tsv
3
tar
Organism
459
Homo sapiens
Biosample type
338
cell line
112
tissue
9
primary cell
Organ
320
liver
107
brain
18
blood
18
bodily fluid
8
spleen
6
epithelium
6
vasculature
5
pancreas
3
blood vessel
1
adipose tissue
1
connective tissue
Project
459
AMP
Genome assembly (visualization)
320
GRCh38
320
hg19
Lab
458
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
14
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
month_released!
December, 2019
BIOSAMPLE
ASSAY
459 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
cell line
HepG2
315
5
GM12878
18
tissue
layer of hippocampus
22
brain
15
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 6 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
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