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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ATAC-seq
52
total RNA-seq
41
WGBS
38
ChIP-seq
35
single cell RNA-seq
22
snATAC-seq
Assay category
118
DNA accessibility
87
Transcription
41
DNA methylation
38
DNA binding
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
6
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
108
fastq
107
bam
97
bigWig
89
bed narrowPeak
26
tsv
19
bigBed narrowPeak
7
txt
3
bed bed3+
1
csv
Organism
284
Homo sapiens
Biosample type
212
primary cell
72
tissue
Organ
187
pancreas
146
epithelium
40
liver
2
musculature of body
Project
150
AMP
134
HPAP
Genome assembly (visualization)
118
hg19
79
GRCh38
Lab
134
Klaus Kaestner, Upenn
86
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
32
missing controlled_by
month_released!
December, 2019
BIOSAMPLE
ASSAY
284 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
single cell RNA-seq
snATAC-seq
primary cell
pancreatic alpha cell
27
10
25
Langerhans cell
33
21
pancreatic beta cell
19
10
16
pancreatic ductal cell
4
4
13
pancreatic acinar cell
8
2
8
+ See 2 more…
tissue
liver
20
20
islet of Langerhans
18
6
6
skeletal muscle tissue
1
1
See all biosamples
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