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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1819
ChIP-seq
1462
total RNA-seq
456
ATAC-seq
303
single cell RNA-seq
131
DNase-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
55
pCHi-C
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
DNA methylation
17
Transcription
Date released
28
July, 2019
6
August, 2017
Available data
17
bam
17
bigWig
17
tsv
15
bed bedMethyl
15
bigBed bedMethyl
4
fastq
Organism
34
Homo sapiens
Biosample type
25
tissue
9
primary cell
Organ
7
musculature of body
6
brain
6
epithelium
kidney
5
liver
4
connective tissue
4
pancreas
3
adipose tissue
3
heart
1
eye
1
pericardium
1
vasculature
Project
34
AMP
Genome assembly (visualization)
32
hg19
17
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
December, 2019
organ_slims!
kidney
BIOSAMPLE
ASSAY
34 results
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RRBS
small RNA-seq
tissue
skeletal muscle tissue
4
1
body of pancreas
2
liver
1
1
right lobe of liver
2
brain
1
+ See 13 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
mesenchymal stem cell of adipose
1
+ See 4 more…
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